Source Code

This section contains the auto-documentation for the source code of the different modules in the dafi package.

• dafi (executable)
• dafi (Package)
  • dafi.inverse
    • AD_EnKF
      • AD_EnKF.__init__()
      • AD_EnKF.analysis()
    • EnKF
      • EnKF.__init__()
      • EnKF.analysis()
    • EnKF_MDA
      • EnKF_MDA.__init__()
      • EnKF_MDA.analysis()
    • EnRML
      • EnRML.__init__()
      • EnRML.analysis()
    • InverseMethod
      • InverseMethod.__init__()
      • InverseMethod.analysis()
    • REnKF
      • REnKF.__init__()
      • REnKF.analysis()
  • dafi.random_field
    • dafi.random_field.covariance
      • array_to_sparse()
      • bc_cov()
      • check_mat()
      • corr_to_cov()
      • cov_to_corr()
      • generate_cov()
      • kernel_input_file()
      • kernel_mixed_periodic_sqrexp()
      • kernel_sqrexp()
      • source_cov_to_output_corr()
      • sparse_to_nan()
    • dafi.random_field.foam
      • foam_header_info()
      • foam_header_logo()
      • foam_sep()
      • get_cell_centres()
      • get_cell_volumes()
      • get_neighbors()
      • get_number_cells()
      • read_cell_centres()
      • read_cell_volumes()
      • read_field()
      • read_field_file()
      • read_header()
      • read_scalar_field()
      • read_symmTensor_field()
      • read_tensor_field()
      • read_vector_field()
      • write()
      • write_Tau()
      • write_U()
      • write_controlDict()
      • write_epsilon()
      • write_field_file()
      • write_k()
      • write_nut()
      • write_omega()
      • write_p()
    • GaussianProcess
      • GaussianProcess.__init__()
      • GaussianProcess.logpdf()
      • GaussianProcess.pdf()
      • GaussianProcess.project_func_field()
      • GaussianProcess.project_gp_field()
      • GaussianProcess.reconstruct_func()
      • GaussianProcess.reconstruct_gp()
      • GaussianProcess.sample_coeffs()
      • GaussianProcess.sample_func()
      • GaussianProcess.sample_gp()
    • LogNormal
      • LogNormal.__init__()
    • calc_kl_modes()
    • calc_kl_modes_coverage()
    • gp_samples_cholesky()
    • gp_samples_kl()
    • gp_samples_kl_coverage()
    • gp_samples_klmodes()
    • gp_sqrexp_samples()
    • inner_product()
    • integral()
    • interpolate_field_rbf()
    • inverse_distance_weights()
    • kl_coverage()
    • norm()
    • project_kl()
    • projection()
    • projection_magnitude()
    • reconstruct_kl()
    • scale_kl_modes()
    • sparse_cholesky()
    • unit_field()
  • run()
  • PhysicsModel
    • PhysicsModel.__init__()
    • PhysicsModel.forecast_to_time()
    • PhysicsModel.generate_ensemble()
    • PhysicsModel.get_obs()
    • PhysicsModel.state_to_observation()